/EXTERNAL BLUEPRINT/K006267_7_lane_gembs/C004GD.Bisulfite-Seq.DNA_Methylation.EGAX00001097773_7

BACK

SAMPLE K006267_7_lane_gembs LANE C004GD.Bisulfite-Seq.DNA_Methylation.EGAX00001097773_7

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2357068986 100.00 % 1178534493 100.00 % 1178534493 100.00 %
General Reads 2301095295 97.63 % 1155050545 98.01 % 1146044750 97.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 26594999 1.13 % 13334788 1.13 % 13260211 1.13 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 29378692 1.25 % 10149160 0.86 % 19229532 1.63 %
Bisulfite_reads C2T 1212134625 51.43 % 608468737 51.63 % 603665888 51.22 %
Bisulfite_reads G2A 1115555669 47.33 % 559916596 47.51 % 555639073 47.15 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 946745638
Average Unique 80.33 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 86756510256 36.14 % 33886426933 28.23 % 52870083323 44.04 %
Base Counts Overall C 31898747504 13.29 % 1377360976 1.15 % 30521386528 25.43 %
Base Counts Overall G 32329895574 13.47 % 31003316171 25.83 % 1326579403 1.11 %
Base Counts Overall T 86708009797 36.12 % 52576778835 43.80 % 34131230962 28.43 %
Base Counts Overall N 2382432627 0.99 % 1193914964 0.99 % 1188517663 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992427518223632
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1129340583



Mapping Quality

Mapping Quality Histogram
C004GD.Bisulfite-Seq.DNA_Methylation.EGAX00001097773_7.mapq.png



Read Length

Read Length Reads
100 172720407
101 1005814086
100 172720407
101 1005814086



Insert Size Plot

Insert Size Histogram
C004GD.Bisulfite-Seq.DNA_Methylation.EGAX00001097773_7.isize.png