/EXTERNAL BLUEPRINT/mapping_coverage/K006267_7_lane_gembs
BACK
SAMPLE K006267_7_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2269418932 |
100% |
199096120140 |
100% |
| Mapped |
2245550334 |
98.95 % |
196688816687 |
98.79 % |
| Passed |
1824103507 |
80.38 % |
154181330732 |
77.44 % |
| NotPassed |
421446827 |
18.57 % |
42507485955 |
21.35 % |
| |
|
|
|
|
| LowMAPQ |
358769216 |
15.81 % |
36183231546 |
18.17 % |
| MateUnmapped |
23868598 |
1.05 % |
2407303453 |
1.21 % |
| Duplicate |
31709386 |
1.40 % |
3201051310 |
1.61 % |
| BadOrientation |
42 |
0.00 % |
4236 |
0.00 % |
| LargeInsertSize |
26698 |
0.00 % |
2692604 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
30941485 |
1.36 % |
3120506259 |
1.57 % |
| Unmapped |
23868598 |
1.05 % |
2407303453 |
1.21 % |
Base Level Counts
| Bases |
# |
% |
| Total |
183955010724 |
100% |
| Passed |
143394512564 |
77.95 % |
| Trimmed |
7716168705 |
4.19 % |
| Clipped |
257116998 |
0.14 % |
| Overlapping |
29516562994 |
16.05 % |
| LowQuality |
3070649463 |
1.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |