/EXTERNAL BLUEPRINT/methylation/K006267_7_lane_gembs

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SAMPLE K006267_7_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26837986 22842146 85.11 %
NonRefCpG 305861 178676 58.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006267_7_lane_gembs_coverage_refCpG.png ./IMG//K006267_7_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006267_7_lane_gembs_coverage_nonRefCpG.png ./IMG//K006267_7_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006267_7_lane_gembs_quality_refcpg.png ./IMG//K006267_7_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006267_7_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6124156 12.34 % 5138938 11.46 % 77095 14.36 % 27331 7.20 %
Intermediate (0.3-0.7) 6016429 12.12 % 4644391 10.36 % 100079 18.64 % 51076 13.46 %
Methylated (0.7-1) 37491131 75.54 % 35065707 78.19 % 359854 67.01 % 301079 79.34 %
Median Methylation 0.880 0.880 0.840 0.880