{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 48790288, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 48009699, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.4, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 37548277, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 37168371, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.99, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 33627885, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1231406, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.036619
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 29773869, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 5982128, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.200919
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 33625893, 
            "distinct_read_pairs": 32437736, 
            "one_read_pair": 31361995, 
            "two_read_pair": 1037319, 
            "NRF": 0.964665, 
            "PBC1": 0.966837, 
            "PBC2": 30.233703
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 29738231, 
            "distinct_read_pairs": 23975411, 
            "one_read_pair": 19273081, 
            "two_read_pair": 3850077, 
            "NRF": 0.806215, 
            "PBC1": 0.803869, 
            "PBC2": 5.005895
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 32396479, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 32396479, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 23791741, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 23791741, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 40501, 
        "Np": 0, 
        "N_opt": 40501, 
        "N_consv": 40501, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -20, 
            "corr_est_frag_len": 0.188617138971856, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.2191073, 
            "argmin_corr": 1500, 
            "min_corr": 0.182131, 
            "NSC": 1.035613, 
            "RSC": 0.1754142
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.0605304815876
        }, 
        "rep1-pr1": {
            "FRiP": 0.0908917536463
        }, 
        "rep1-pr2": {
            "FRiP": 0.091659229248
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0267455967329
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.252920269714, 
            "auc": 0.490460184425, 
            "ch_div": 0.145039526245, 
            "elbow_pt": 2.08778037278e-93, 
            "jsd": 0.627011799894, 
            "syn_auc": 0.496486080091, 
            "syn_elbow_pt": 0.0934337033883, 
            "syn_jsd": 0.285734477235
        }
    ]
}
