/EXTERNAL BLUEPRINT/K006330_15_lane_gembs

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SAMPLE K006330_15_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1099290272 100.00 % 549645136 100.00 % 549645136 100.00 %
General Reads 1063873630 96.78 % 533992082 97.15 % 529881548 96.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18592358 1.69 % 9322173 1.70 % 9270185 1.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16824284 1.53 % 6330881 1.15 % 10493403 1.91 %
Bisulfite_reads C2T 570275228 51.88 % 286245097 52.08 % 284030131 51.68 %
Bisulfite_reads G2A 512190760 46.59 % 257069158 46.77 % 255121602 46.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 425031151
Average Unique 77.33 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39491654580 35.22 % 15762306366 28.11 % 23729348214 42.33 %
Base Counts Overall C 16009298484 14.28 % 734098987 1.31 % 15275199497 27.25 %
Base Counts Overall G 16184713208 14.43 % 15460263304 27.58 % 724449904 1.29 %
Base Counts Overall T 39306807288 35.06 % 23555208061 42.02 % 15751599227 28.10 %
Base Counts Overall N 1135134184 1.01 % 551927154 0.98 % 583207030 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992720710716647
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 520624181



Mapping Quality

Mapping Quality Histogram
K006330_15_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006330_15_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00DCS.Bisulfite-Seq.DNA_Methylation.EGAX00001236267_15