/EXTERNAL BLUEPRINT/mapping_coverage/K006330_15_lane_gembs
BACK
SAMPLE K006330_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1048779188 |
100% |
91034319695 |
100% |
| Mapped |
1037898782 |
98.96 % |
89935398689 |
98.79 % |
| Passed |
811171814 |
77.34 % |
67035974921 |
73.64 % |
| NotPassed |
226726968 |
21.62 % |
22899423768 |
25.15 % |
| |
|
|
|
|
| LowMAPQ |
194719986 |
18.57 % |
19666718586 |
21.60 % |
| MateUnmapped |
10880406 |
1.04 % |
1098921006 |
1.21 % |
| Duplicate |
15132828 |
1.44 % |
1528415628 |
1.68 % |
| BadOrientation |
74 |
0.00 % |
7474 |
0.00 % |
| LargeInsertSize |
28112 |
0.00 % |
2839312 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16845968 |
1.61 % |
1701442768 |
1.87 % |
| Unmapped |
10880406 |
1.04 % |
1098921006 |
1.21 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81923122929 |
100% |
| Passed |
63044166556 |
76.96 % |
| Trimmed |
3399647364 |
4.15 % |
| Clipped |
93847562 |
0.11 % |
| Overlapping |
14793300446 |
18.06 % |
| LowQuality |
592161001 |
0.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |