/EXTERNAL BLUEPRINT/methylation/K006330_15_lane_gembs

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SAMPLE K006330_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26294418 17924051 68.17 %
NonRefCpG 331867 125769 37.90 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006330_15_lane_gembs_coverage_refCpG.png ./IMG//K006330_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006330_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006330_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006330_15_lane_gembs_quality_refcpg.png ./IMG//K006330_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006330_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6458806 14.40 % 4402415 12.67 % 109638 20.46 % 27642 9.90 %
Intermediate (0.3-0.7) 8903685 19.85 % 5249717 15.10 % 141235 26.36 % 53871 19.30 %
Methylated (0.7-1) 29497650 65.75 % 25106747 72.23 % 284982 53.18 % 197626 70.80 %
Median Methylation 0.820 0.850 0.730 0.840