/EXTERNAL BLUEPRINT/K006273_11_lane_gembs

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SAMPLE K006273_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1168909520 100.00 % 584454760 100.00 % 584454760 100.00 %
General Reads 1124586085 96.21 % 563917470 96.49 % 560668615 95.93 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15983078 1.37 % 8011699 1.37 % 7971379 1.36 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28340357 2.42 % 12525591 2.14 % 15814766 2.71 %
Bisulfite_reads C2T 602362314 51.53 % 302089025 51.69 % 300273289 51.38 %
Bisulfite_reads G2A 538206849 46.04 % 269840144 46.17 % 268366705 45.92 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 453174870
Average Unique 77.54 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 42711253694 35.85 % 16960997269 28.47 % 25750256425 43.23 %
Base Counts Overall C 16255271177 13.64 % 883148536 1.48 % 15372122641 25.81 %
Base Counts Overall G 16454134588 13.81 % 15598840334 26.19 % 855294254 1.44 %
Base Counts Overall T 42459737421 35.64 % 25510255142 42.83 % 16949482279 28.45 %
Base Counts Overall N 1254316456 1.05 % 614115387 1.03 % 640201069 1.07 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992476124251916
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 551554140



Mapping Quality

Mapping Quality Histogram
K006273_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006273_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C003K9.Bisulfite-Seq.DNA_Methylation.EGAX00001123394_11