/EXTERNAL BLUEPRINT/mapping_coverage/K006273_11_lane_gembs
BACK
SAMPLE K006273_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1101985759 |
100% |
98581654328 |
100% |
| Mapped |
1089843978 |
98.90 % |
97356388968 |
98.76 % |
| Passed |
854765663 |
77.57 % |
73631072395 |
74.69 % |
| NotPassed |
235078315 |
21.33 % |
23725316573 |
24.07 % |
| |
|
|
|
|
| LowMAPQ |
194656948 |
17.66 % |
19644524166 |
19.93 % |
| MateUnmapped |
12141781 |
1.10 % |
1225265360 |
1.24 % |
| Duplicate |
22623921 |
2.05 % |
2284702518 |
2.32 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
18906 |
0.00 % |
1907966 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17778510 |
1.61 % |
1794178893 |
1.82 % |
| Unmapped |
12141781 |
1.10 % |
1225265360 |
1.24 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86254531184 |
100% |
| Passed |
69083053715 |
80.09 % |
| Trimmed |
3645893397 |
4.23 % |
| Clipped |
99748790 |
0.12 % |
| Overlapping |
12523709999 |
14.52 % |
| LowQuality |
902125283 |
1.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |