/EXTERNAL BLUEPRINT/methylation/K006273_11_lane_gembs

BACK

SAMPLE K006273_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26609994 21011839 78.96 %
NonRefCpG 371131 179308 48.31 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006273_11_lane_gembs_coverage_refCpG.png ./IMG//K006273_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006273_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006273_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006273_11_lane_gembs_quality_refcpg.png ./IMG//K006273_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006273_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5740179 12.08 % 4316205 10.67 % 112126 17.73 % 31608 8.11 %
Intermediate (0.3-0.7) 6381117 13.43 % 4353317 10.76 % 132884 21.01 % 56853 14.58 %
Methylated (0.7-1) 35388321 74.49 % 31774484 78.56 % 387474 61.26 % 301407 77.31 %
Median Methylation 0.880 0.890 0.810 0.880