/EXTERNAL BLUEPRINT/K006274_11_lane_gembs/C003VO.Bisulfite-Seq.DNA_Methylation.EGAX00001123395_11

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SAMPLE K006274_11_lane_gembs LANE C003VO.Bisulfite-Seq.DNA_Methylation.EGAX00001123395_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1054454170 100.00 % 527227085 100.00 % 527227085 100.00 %
General Reads 1024991201 97.21 % 513936184 97.48 % 511055017 96.93 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10651914 1.01 % 5339249 1.01 % 5312665 1.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18811055 1.78 % 7951652 1.51 % 10859403 2.06 %
Bisulfite_reads C2T 541165195 51.32 % 271341907 51.47 % 269823288 51.18 %
Bisulfite_reads G2A 494477920 46.89 % 247933526 47.03 % 246544394 46.76 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 423398176
Average Unique 80.31 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39087064976 36.38 % 15186140200 28.27 % 23900924776 44.49 %
Base Counts Overall C 14067178626 13.09 % 721250384 1.34 % 13345928242 24.84 %
Base Counts Overall G 14271894824 13.28 % 13579607007 25.28 % 692287817 1.29 %
Base Counts Overall T 38891251255 36.20 % 23684078284 44.08 % 15207172971 28.31 %
Base Counts Overall N 1131559009 1.05 % 553398470 1.03 % 578160539 1.08 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992518837443771
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 504172547



Mapping Quality

Mapping Quality Histogram
C003VO.Bisulfite-Seq.DNA_Methylation.EGAX00001123395_11.mapq.png



Read Length

Read Length Reads
101 474538760
100 52688325
101 474538760
100 52688325



Insert Size Plot

Insert Size Histogram
C003VO.Bisulfite-Seq.DNA_Methylation.EGAX00001123395_11.isize.png