/EXTERNAL BLUEPRINT/mapping_coverage/K006274_11_lane_gembs
BACK
SAMPLE K006274_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1012955078 |
100% |
90487258731 |
100% |
| Mapped |
1003302831 |
99.05 % |
89513409824 |
98.92 % |
| Passed |
820538336 |
81.00 % |
71071765098 |
78.54 % |
| NotPassed |
182764495 |
18.04 % |
18441644726 |
20.38 % |
| |
|
|
|
|
| LowMAPQ |
158003318 |
15.60 % |
15942310914 |
17.62 % |
| MateUnmapped |
9652247 |
0.95 % |
973848907 |
1.08 % |
| Duplicate |
12046737 |
1.19 % |
1216471467 |
1.34 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
12162 |
0.00 % |
1227180 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12702260 |
1.25 % |
1281633347 |
1.42 % |
| Unmapped |
9652247 |
0.95 % |
973848907 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82786074173 |
100% |
| Passed |
66657612682 |
80.52 % |
| Trimmed |
3517623068 |
4.25 % |
| Clipped |
96660970 |
0.12 % |
| Overlapping |
11617648105 |
14.03 % |
| LowQuality |
896529348 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |