/EXTERNAL BLUEPRINT/methylation/K006274_11_lane_gembs

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SAMPLE K006274_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26703328 21454695 80.34 %
NonRefCpG 329722 163169 49.49 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006274_11_lane_gembs_coverage_refCpG.png ./IMG//K006274_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006274_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006274_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006274_11_lane_gembs_quality_refcpg.png ./IMG//K006274_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006274_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5556418 11.45 % 4249202 10.12 % 108905 18.99 % 31273 8.59 %
Intermediate (0.3-0.7) 6945043 14.31 % 4918594 11.71 % 119376 20.82 % 56729 15.59 %
Methylated (0.7-1) 36042772 74.25 % 32818371 78.16 % 345165 60.19 % 275922 75.82 %
Median Methylation 0.870 0.880 0.800 0.870