{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 43399494, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41528218, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.69, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 36402223, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36001214, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.9, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 33794515, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 19029356, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.56309
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 28538076, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 685413, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.024017
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 33792258, 
            "distinct_read_pairs": 15156728, 
            "one_read_pair": 6847452, 
            "two_read_pair": 3428719, 
            "NRF": 0.448527, 
            "PBC1": 0.451776, 
            "PBC2": 1.997088
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 28525170, 
            "distinct_read_pairs": 27859767, 
            "one_read_pair": 27237303, 
            "two_read_pair": 606876, 
            "NRF": 0.976673, 
            "PBC1": 0.977657, 
            "PBC2": 44.881167
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 14765159, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 14765159, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 27852663, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 27852663, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 54331, 
        "Np": 0, 
        "N_opt": 54331, 
        "N_consv": 54331, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 125, 
            "corr_est_frag_len": 0.129291655136621, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.1247633, 
            "argmin_corr": 1500, 
            "min_corr": 0.1093572, 
            "NSC": 1.182287, 
            "RSC": 1.293936
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.22982116639
        }, 
        "rep1-pr1": {
            "FRiP": 0.253893682626
        }, 
        "rep1-pr2": {
            "FRiP": 0.253924602602
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.181894533733
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.199158472674, 
            "auc": 0.48585534084, 
            "ch_div": 0.264018121694, 
            "elbow_pt": 5.72428260856e-42, 
            "jsd": 0.666853934831, 
            "syn_auc": 0.503682780809, 
            "syn_elbow_pt": 0.221554537643, 
            "syn_jsd": 0.333291105165
        }
    ]
}
