/EXTERNAL BLUEPRINT/K006296_K006300_22_lane_gembs/C0067N.Bisulfite-Seq.DNA_Methylation.EGAX00001195938_14
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1100612818 | 100.00 % | 550306409 | 100.00 % | 550306409 | 100.00 % |
| General Reads | 1041948628 | 94.67 % | 522834847 | 95.01 % | 519113781 | 94.33 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 18088079 | 1.64 % | 9065473 | 1.65 % | 9022606 | 1.64 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 40576111 | 3.69 % | 18406089 | 3.34 % | 22170022 | 4.03 % |
| Bisulfite_reads C2T | 564470930 | 51.29 % | 283262884 | 51.47 % | 281208046 | 51.10 % |
| Bisulfite_reads G2A | 495565777 | 45.03 % | 248637436 | 45.18 % | 246928341 | 44.87 % |
| Concept | Value |
|---|---|
| Unique Fragments | 416071032 |
| Average Unique | 75.61 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 39584360596 | 35.26 % | 16069171861 | 28.63 % | 23515188735 | 41.89 % |
| Base Counts Overall C | 16034682467 | 14.28 % | 1023561931 | 1.82 % | 15011120536 | 26.74 % |
| Base Counts Overall G | 16160446160 | 14.40 % | 15185931835 | 27.05 % | 974514325 | 1.74 % |
| Base Counts Overall T | 39329046609 | 35.03 % | 23287977862 | 41.49 % | 16041068747 | 28.58 % |
| Base Counts Overall N | 1153971604 | 1.03 % | 564610229 | 1.01 % | 589361375 | 1.05 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9983170897130891 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 512089151 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 550306409 |
| 101 | 550306409 |
| Insert Size Histogram |
|---|
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