/EXTERNAL BLUEPRINT/K006296_K006300_22_lane_gembs/C0067N.Bisulfite-Seq.DNA_Methylation.EGAX00001195944_8

BACK

SAMPLE K006296_K006300_22_lane_gembs LANE C0067N.Bisulfite-Seq.DNA_Methylation.EGAX00001195944_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 605286508 100.00 % 302643254 100.00 % 302643254 100.00 %
General Reads 580977639 95.98 % 290961531 96.14 % 290016108 95.83 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11712537 1.94 % 5861111 1.94 % 5851426 1.93 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 12596332 2.08 % 5820612 1.92 % 6775720 2.24 %
Bisulfite_reads C2T 313256590 51.75 % 156891801 51.84 % 156364789 51.67 %
Bisulfite_reads G2A 279433586 46.17 % 139930841 46.24 % 139502745 46.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 239504305
Average Unique 79.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 22079565980 35.76 % 8641573194 27.99 % 13437992786 43.53 %
Base Counts Overall C 8499103325 13.77 % 451114657 1.46 % 8047988668 26.07 %
Base Counts Overall G 8576409598 13.89 % 8140608583 26.37 % 435801015 1.41 %
Base Counts Overall T 21967725383 35.58 % 13331039760 43.18 % 8636685623 27.98 %
Base Counts Overall N 616419530 1.00 % 305275714 0.99 % 311143816 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994932162196833
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 288683507



Mapping Quality

Mapping Quality Histogram
C0067N.Bisulfite-Seq.DNA_Methylation.EGAX00001195944_8.mapq.png



Read Length

Read Length Reads
101 302643254
101 302643254



Insert Size Plot

Insert Size Histogram
C0067N.Bisulfite-Seq.DNA_Methylation.EGAX00001195944_8.isize.png