/EXTERNAL BLUEPRINT/mapping_coverage/K006296_K006300_22_lane_gembs
BACK
SAMPLE K006296_K006300_22_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1602383879 |
100% |
142579432535 |
100% |
| Mapped |
1587391499 |
99.06 % |
141065202155 |
98.94 % |
| Passed |
1254404580 |
78.28 % |
107433523336 |
75.35 % |
| NotPassed |
332986919 |
20.78 % |
33631678819 |
23.59 % |
| |
|
|
|
|
| LowMAPQ |
289059198 |
18.04 % |
29194978998 |
20.48 % |
| MateUnmapped |
14992380 |
0.94 % |
1514230380 |
1.06 % |
| Duplicate |
20568424 |
1.28 % |
2077410824 |
1.46 % |
| BadOrientation |
52 |
0.00 % |
5252 |
0.00 % |
| LargeInsertSize |
31064 |
0.00 % |
3137464 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23328181 |
1.46 % |
2356146281 |
1.65 % |
| Unmapped |
14992380 |
0.94 % |
1514230380 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
126689113660 |
100% |
| Passed |
100790537871 |
79.56 % |
| Trimmed |
5356203294 |
4.23 % |
| Clipped |
145961367 |
0.12 % |
| Overlapping |
19109628957 |
15.08 % |
| LowQuality |
1286782171 |
1.02 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |