/EXTERNAL BLUEPRINT/methylation/K006296_K006300_22_lane_gembs
BACK
SAMPLE K006296_K006300_22_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26715338 |
21396910 |
80.09 % |
| NonRefCpG |
326539 |
165404 |
50.65 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5829419 |
12.26 % |
4574617 |
11.10 % |
90883 |
16.55 % |
26719 |
7.63 % |
| Intermediate (0.3-0.7) |
6531545 |
13.74 % |
4589323 |
11.14 % |
114946 |
20.94 % |
51656 |
14.75 % |
| Methylated (0.7-1) |
35170081 |
73.99 % |
32041196 |
77.76 % |
343161 |
62.51 % |
271782 |
77.62 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.880 |
|
0.810 |
|
0.870 |
|