/EXTERNAL BLUEPRINT/K006279_K006281_11_lane_gembs/25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128265_3

BACK

SAMPLE K006279_K006281_11_lane_gembs LANE 25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128265_3

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 929704162 100.00 % 464852081 100.00 % 464852081 100.00 %
General Reads 888002087 95.51 % 445700282 95.88 % 442301805 95.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4265626 0.46 % 2140624 0.46 % 2125002 0.46 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37436449 4.03 % 17011175 3.66 % 20425274 4.39 %
Bisulfite_reads C2T 477599448 51.37 % 239780372 51.58 % 237819076 51.16 %
Bisulfite_reads G2A 414668265 44.60 % 208060534 44.76 % 206607731 44.45 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 339665065
Average Unique 73.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33277109285 35.09 % 13611372296 28.71 % 19665736989 41.48 %
Base Counts Overall C 13616012950 14.36 % 521612135 1.10 % 13094400815 27.62 %
Base Counts Overall G 13726335399 14.47 % 13210561029 27.86 % 515774370 1.09 %
Base Counts Overall T 33048781980 34.85 % 19583032865 41.30 % 13465749115 28.40 %
Base Counts Overall N 1161584910 1.22 % 488333937 1.03 % 673250973 1.42 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994591587971378
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 429481540



Mapping Quality

Mapping Quality Histogram
25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128265_3.mapq.png



Read Length

Read Length Reads
101 464852081
101 464852081



Insert Size Plot

Insert Size Histogram
25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128265_3.isize.png