/EXTERNAL BLUEPRINT/mapping_coverage/K006279_K006281_11_lane_gembs
BACK
SAMPLE K006279_K006281_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1701571916 |
100% |
155368114898 |
100% |
| Mapped |
1683592479 |
98.94 % |
153552191761 |
98.83 % |
| Passed |
1310194055 |
77.00 % |
115838950937 |
74.56 % |
| NotPassed |
373398424 |
21.94 % |
37713240824 |
24.27 % |
| |
|
|
|
|
| LowMAPQ |
320988818 |
18.86 % |
32419870618 |
20.87 % |
| MateUnmapped |
17979437 |
1.06 % |
1815923137 |
1.17 % |
| Duplicate |
24080745 |
1.42 % |
2432155245 |
1.57 % |
| BadOrientation |
46 |
0.00 % |
4646 |
0.00 % |
| LargeInsertSize |
68384 |
0.00 % |
6906784 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28260431 |
1.66 % |
2854303531 |
1.84 % |
| Unmapped |
17979437 |
1.06 % |
1815923137 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
132322291599 |
100% |
| Passed |
108323579730 |
81.86 % |
| Trimmed |
5657931204 |
4.28 % |
| Clipped |
209632846 |
0.16 % |
| Overlapping |
16273707816 |
12.30 % |
| LowQuality |
1857440003 |
1.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |