/EXTERNAL BLUEPRINT/methylation/K006279_K006281_11_lane_gembs
BACK
SAMPLE K006279_K006281_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26559055 |
14132253 |
53.21 % |
| NonRefCpG |
300678 |
92248 |
30.68 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
24948639 |
52.82 % |
15678478 |
47.23 % |
289304 |
54.76 % |
126243 |
46.59 % |
| Intermediate (0.3-0.7) |
9845263 |
20.85 % |
6537037 |
19.69 % |
127642 |
24.16 % |
64071 |
23.64 % |
| Methylated (0.7-1) |
12435737 |
26.33 % |
10983641 |
33.08 % |
111374 |
21.08 % |
80679 |
29.77 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.260 |
|
0.350 |
|
0.250 |
|
0.350 |
|