/EXTERNAL BLUEPRINT/mapping_coverage/K006377_15_lane_gembs
BACK
SAMPLE K006377_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1332277750 |
100% |
121733406838 |
100% |
| Mapped |
1318647172 |
98.98 % |
120356718460 |
98.87 % |
| Passed |
1137253137 |
85.36 % |
102035920925 |
83.82 % |
| NotPassed |
181394035 |
13.62 % |
18320797535 |
15.05 % |
| |
|
|
|
|
| LowMAPQ |
158605960 |
11.90 % |
16019201960 |
13.16 % |
| MateUnmapped |
13630578 |
1.02 % |
1376688378 |
1.13 % |
| Duplicate |
3017004 |
0.23 % |
304717404 |
0.25 % |
| BadOrientation |
8 |
0.00 % |
808 |
0.00 % |
| LargeInsertSize |
4492 |
0.00 % |
453692 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19766571 |
1.48 % |
1996423671 |
1.64 % |
| Unmapped |
13630578 |
1.02 % |
1376688378 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
114854940731 |
100% |
| Passed |
95678998691 |
83.30 % |
| Trimmed |
5006781272 |
4.36 % |
| Clipped |
142080936 |
0.12 % |
| Overlapping |
12676938870 |
11.04 % |
| LowQuality |
1350140962 |
1.18 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |