/EXTERNAL BLUEPRINT/methylation/K006377_15_lane_gembs

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SAMPLE K006377_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26794381 24150994 90.13 %
NonRefCpG 252882 190346 75.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006377_15_lane_gembs_coverage_refCpG.png ./IMG//K006377_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006377_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006377_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006377_15_lane_gembs_quality_refcpg.png ./IMG//K006377_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006377_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11967971 22.62 % 10966002 22.18 % 102231 21.17 % 77228 19.40 %
Intermediate (0.3-0.7) 11696803 22.11 % 10574330 21.39 % 122393 25.35 % 94507 23.74 %
Methylated (0.7-1) 29241208 55.27 % 27899322 56.43 % 258232 53.48 % 226380 56.86 %
Median Methylation 0.760 0.770 0.730 0.770