{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 41434286, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 39889564, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.27, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 38690123, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 37924148, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.02, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 32657886, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 11771229, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.360441
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 33605508, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 11929282, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.35498
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 32655272, 
            "distinct_read_pairs": 21204967, 
            "one_read_pair": 13534873, 
            "two_read_pair": 5099574, 
            "NRF": 0.649358, 
            "PBC1": 0.638288, 
            "PBC2": 2.654118
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 33571595, 
            "distinct_read_pairs": 22057727, 
            "one_read_pair": 14263150, 
            "two_read_pair": 5262609, 
            "NRF": 0.657035, 
            "PBC1": 0.646628, 
            "PBC2": 2.710281
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 20886657, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 20886657, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 21676226, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 21676226, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 28956, 
        "Np": 0, 
        "N_opt": 28956, 
        "N_consv": 28956, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 185, 
            "corr_est_frag_len": 0.171596164854844, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.1560561, 
            "argmin_corr": 1500, 
            "min_corr": 0.1363653, 
            "NSC": 1.258357, 
            "RSC": 1.7892
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.173634086063
        }, 
        "rep1-pr1": {
            "FRiP": 0.174940043277
        }, 
        "rep1-pr2": {
            "FRiP": 0.175108967825
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.158481008246
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.235457294226, 
            "auc": 0.488110658359, 
            "ch_div": 0.179359582865, 
            "elbow_pt": 9.1309398992e-60, 
            "jsd": 0.635706774043, 
            "syn_auc": 0.492208175304, 
            "syn_elbow_pt": 0.185245165528, 
            "syn_jsd": 0.3169888631
        }
    ]
}
