/EXTERNAL BLUEPRINT/K006378_15_lane_gembs

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SAMPLE K006378_15_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1455081584 100.00 % 727540792 100.00 % 727540792 100.00 %
General Reads 1421829188 97.71 % 713880416 98.12 % 707948772 97.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5579882 0.38 % 2800148 0.38 % 2779734 0.38 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27672514 1.90 % 10860228 1.49 % 16812286 2.31 %
Bisulfite_reads C2T 730512118 50.20 % 366748716 50.41 % 363763402 50.00 %
Bisulfite_reads G2A 696896952 47.89 % 349931848 48.10 % 346965104 47.69 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 607946672
Average Unique 83.56 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57546888141 38.77 % 22054612970 29.72 % 35492275171 47.83 %
Base Counts Overall C 15919345427 10.73 % 687616025 0.93 % 15231729402 20.53 %
Base Counts Overall G 16075543560 10.83 % 15412599714 20.77 % 662943846 0.89 %
Base Counts Overall T 57395622290 38.67 % 35322898282 47.60 % 22072724008 29.74 %
Base Counts Overall N 1480922150 1.00 % 731433793 0.99 % 749488357 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991108793858913
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 694596792



Mapping Quality

Mapping Quality Histogram
K006378_15_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006378_15_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
12CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001343012_15