/EXTERNAL BLUEPRINT/mapping_coverage/K006378_15_lane_gembs
BACK
SAMPLE K006378_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1418161669 |
100% |
128025597964 |
100% |
| Mapped |
1404449735 |
99.03 % |
126640692630 |
98.92 % |
| Passed |
1212287479 |
85.48 % |
107232304774 |
83.76 % |
| NotPassed |
192162256 |
13.55 % |
19408387856 |
15.16 % |
| |
|
|
|
|
| LowMAPQ |
168239466 |
11.86 % |
16992186066 |
13.27 % |
| MateUnmapped |
13711934 |
0.97 % |
1384905334 |
1.08 % |
| Duplicate |
3669302 |
0.26 % |
370599502 |
0.29 % |
| BadOrientation |
20 |
0.00 % |
2020 |
0.00 % |
| LargeInsertSize |
6344 |
0.00 % |
640744 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20247124 |
1.43 % |
2044959524 |
1.60 % |
| Unmapped |
13711934 |
0.97 % |
1384905334 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
122434063551 |
100% |
| Passed |
100581102266 |
82.15 % |
| Trimmed |
5293473821 |
4.32 % |
| Clipped |
149961331 |
0.12 % |
| Overlapping |
15051797446 |
12.29 % |
| LowQuality |
1357728687 |
1.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |