/EXTERNAL BLUEPRINT/methylation/K006378_15_lane_gembs

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SAMPLE K006378_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26810371 24598818 91.75 %
NonRefCpG 254596 196591 77.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006378_15_lane_gembs_coverage_refCpG.png ./IMG//K006378_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006378_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006378_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006378_15_lane_gembs_quality_refcpg.png ./IMG//K006378_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006378_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8667928 16.37 % 7980149 15.97 % 65056 13.41 % 45311 11.17 %
Intermediate (0.3-0.7) 8724012 16.48 % 7851136 15.71 % 92356 19.03 % 68073 16.78 %
Methylated (0.7-1) 35557766 67.15 % 34140941 68.32 % 327891 67.56 % 292303 72.05 %
Median Methylation 0.850 0.860 0.850 0.870