/EXTERNAL BLUEPRINT/K006275_11_lane_gembs

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SAMPLE K006275_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1068024134 100.00 % 534012067 100.00 % 534012067 100.00 %
General Reads 1026289808 96.09 % 514178531 96.29 % 512111277 95.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15040842 1.41 % 7535557 1.41 % 7505285 1.41 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26693484 2.50 % 12297979 2.30 % 14395505 2.70 %
Bisulfite_reads C2T 542227762 50.77 % 271684976 50.88 % 270542786 50.66 %
Bisulfite_reads G2A 499102888 46.73 % 250029112 46.82 % 249073776 46.64 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 426774950
Average Unique 79.92 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39462583062 36.26 % 15335713521 28.18 % 24126869541 44.34 %
Base Counts Overall C 14402703306 13.23 % 813411901 1.49 % 13589291405 24.97 %
Base Counts Overall G 14643427209 13.46 % 13846275543 25.45 % 797151666 1.46 %
Base Counts Overall T 39176306202 36.00 % 23859753358 43.85 % 15316552844 28.15 %
Base Counts Overall N 1146312853 1.05 % 560511993 1.03 % 585800860 1.08 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992810836214426
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 505965203



Mapping Quality

Mapping Quality Histogram
K006275_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006275_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C0068L.Bisulfite-Seq.DNA_Methylation.EGAX00001123396_11