/EXTERNAL BLUEPRINT/mapping_coverage/K006275_11_lane_gembs
BACK
SAMPLE K006275_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1012610317 |
100% |
89992465352 |
100% |
| Mapped |
1002410576 |
98.99 % |
88963401683 |
98.86 % |
| Passed |
819708283 |
80.95 % |
70527943455 |
78.37 % |
| NotPassed |
182702293 |
18.04 % |
18435458228 |
20.49 % |
| |
|
|
|
|
| LowMAPQ |
155390346 |
15.35 % |
15678602938 |
17.42 % |
| MateUnmapped |
10199741 |
1.01 % |
1029063669 |
1.14 % |
| Duplicate |
13693256 |
1.35 % |
1382751591 |
1.54 % |
| BadOrientation |
22 |
0.00 % |
2218 |
0.00 % |
| LargeInsertSize |
10606 |
0.00 % |
1070132 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13608063 |
1.34 % |
1373031349 |
1.53 % |
| Unmapped |
10199741 |
1.01 % |
1029063669 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82702039014 |
100% |
| Passed |
66157234837 |
79.99 % |
| Trimmed |
3496087298 |
4.23 % |
| Clipped |
98363265 |
0.12 % |
| Overlapping |
12075732294 |
14.60 % |
| LowQuality |
874621320 |
1.06 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |