/EXTERNAL BLUEPRINT/methylation/K006275_11_lane_gembs

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SAMPLE K006275_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26679107 21452753 80.41 %
NonRefCpG 329416 158600 48.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006275_11_lane_gembs_coverage_refCpG.png ./IMG//K006275_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006275_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006275_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006275_11_lane_gembs_quality_refcpg.png ./IMG//K006275_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006275_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5727191 11.86 % 4379873 10.49 % 111129 19.53 % 31327 8.85 %
Intermediate (0.3-0.7) 6508426 13.48 % 4586496 10.99 % 117707 20.68 % 53253 15.05 %
Methylated (0.7-1) 36052939 74.66 % 32766923 78.52 % 340218 59.79 % 269362 76.10 %
Median Methylation 0.870 0.890 0.800 0.880