/EXTERNAL BLUEPRINT/mapping_coverage/K006291_10_lane_gembs
BACK
SAMPLE K006291_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1035095340 |
100% |
93029488441 |
100% |
| Mapped |
1024735293 |
99.00 % |
91983123694 |
98.88 % |
| Passed |
802672671 |
77.55 % |
69554798872 |
74.77 % |
| NotPassed |
222062622 |
21.45 % |
22428324822 |
24.11 % |
| |
|
|
|
|
| LowMAPQ |
190632486 |
18.42 % |
19253881086 |
20.70 % |
| MateUnmapped |
10360047 |
1.00 % |
1046364747 |
1.12 % |
| Duplicate |
16937380 |
1.64 % |
1710675380 |
1.84 % |
| BadOrientation |
34 |
0.00 % |
3434 |
0.00 % |
| LargeInsertSize |
14486 |
0.00 % |
1463086 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14478236 |
1.40 % |
1462301836 |
1.57 % |
| Unmapped |
10360047 |
1.00 % |
1046364747 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81065310537 |
100% |
| Passed |
65050510950 |
80.24 % |
| Trimmed |
3411891481 |
4.21 % |
| Clipped |
93687780 |
0.12 % |
| Overlapping |
11416823885 |
14.08 % |
| LowQuality |
1092396441 |
1.35 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |