/EXTERNAL BLUEPRINT/K006292_10_lane_gembs

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SAMPLE K006292_10_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1275429964 100.00 % 637714982 100.00 % 637714982 100.00 %
General Reads 1218255056 95.52 % 611759420 95.93 % 606495636 95.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20658923 1.62 % 10367623 1.63 % 10291300 1.61 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36515985 2.86 % 15587939 2.44 % 20928046 3.28 %
Bisulfite_reads C2T 647678366 50.78 % 325230526 51.00 % 322447840 50.56 %
Bisulfite_reads G2A 591235613 46.36 % 296896517 46.56 % 294339096 46.16 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 500773137
Average Unique 78.53 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46581254049 35.81 % 18345051122 28.20 % 28236202927 43.41 %
Base Counts Overall C 17864925580 13.73 % 1024657115 1.58 % 16840268465 25.89 %
Base Counts Overall G 18099752523 13.91 % 17113317931 26.31 % 986434592 1.52 %
Base Counts Overall T 46230264593 35.54 % 27920610080 42.92 % 18309654513 28.15 %
Base Counts Overall N 1317659583 1.01 % 643291916 0.99 % 674367667 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.998918691061867
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 600835107



Mapping Quality

Mapping Quality Histogram
K006292_10_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006292_10_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S0022I.Bisulfite-Seq.DNA_Methylation.EGAX00001147734_10