/EXTERNAL BLUEPRINT/mapping_coverage/K006292_10_lane_gembs
BACK
SAMPLE K006292_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1196473662 |
100% |
107683424599 |
100% |
| Mapped |
1183493734 |
98.92 % |
106372451871 |
98.78 % |
| Passed |
947528418 |
79.19 % |
82539954955 |
76.65 % |
| NotPassed |
235965316 |
19.72 % |
23832496916 |
22.13 % |
| |
|
|
|
|
| LowMAPQ |
197033110 |
16.47 % |
19900344110 |
18.48 % |
| MateUnmapped |
12979928 |
1.08 % |
1310972728 |
1.22 % |
| Duplicate |
21798486 |
1.82 % |
2201647086 |
2.04 % |
| BadOrientation |
20 |
0.00 % |
2020 |
0.00 % |
| LargeInsertSize |
17720 |
0.00 % |
1789720 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17115980 |
1.43 % |
1728713980 |
1.61 % |
| Unmapped |
12979928 |
1.08 % |
1310972728 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
95695183969 |
100% |
| Passed |
77158934158 |
80.63 % |
| Trimmed |
4039011284 |
4.22 % |
| Clipped |
111335371 |
0.12 % |
| Overlapping |
13043893643 |
13.63 % |
| LowQuality |
1342009513 |
1.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |