/EXTERNAL BLUEPRINT/methylation/K006292_10_lane_gembs

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SAMPLE K006292_10_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26617496 21083360 79.21 %
NonRefCpG 324122 159591 49.24 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006292_10_lane_gembs_coverage_refCpG.png ./IMG//K006292_10_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006292_10_lane_gembs_coverage_nonRefCpG.png ./IMG//K006292_10_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006292_10_lane_gembs_quality_refcpg.png ./IMG//K006292_10_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006292_10_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6052769 12.74 % 4609560 11.33 % 98634 17.95 % 28931 8.43 %
Intermediate (0.3-0.7) 6837534 14.39 % 4729349 11.62 % 117071 21.31 % 52471 15.28 %
Methylated (0.7-1) 34617337 72.87 % 31357019 77.05 % 333681 60.74 % 261945 76.29 %
Median Methylation 0.860 0.880 0.800 0.870