/EXTERNAL BLUEPRINT/K006314_21_lane_gembs/S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208468_21

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SAMPLE K006314_21_lane_gembs LANE S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208468_21

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1169960114 100.00 % 584980057 100.00 % 584980057 100.00 %
General Reads 1121827613 95.89 % 561997097 96.07 % 559830516 95.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 26797387 2.29 % 13412781 2.29 % 13384606 2.29 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21335114 1.82 % 9570179 1.64 % 11764935 2.01 %
Bisulfite_reads C2T 607529066 51.93 % 304427252 52.04 % 303101814 51.81 %
Bisulfite_reads G2A 541095934 46.25 % 270982626 46.32 % 270113308 46.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 444382989
Average Unique 75.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41205263858 34.54 % 16956593095 28.42 % 24248670763 40.65 %
Base Counts Overall C 17915637873 15.02 % 903783190 1.52 % 17011854683 28.52 %
Base Counts Overall G 18041713853 15.12 % 17130653320 28.72 % 911060533 1.53 %
Base Counts Overall T 40956156210 34.33 % 24070314580 40.35 % 16885841630 28.31 %
Base Counts Overall N 1191063682 1.00 % 593573553 1.00 % 597490129 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989739598415632
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 548043296



Mapping Quality

Mapping Quality Histogram
S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208468_21.mapq.png



Read Length

Read Length Reads
101 571931981
100 13048076
101 571931981
100 13048076



Insert Size Plot

Insert Size Histogram
S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208468_21.isize.png