/EXTERNAL BLUEPRINT/mapping_coverage/K006314_21_lane_gembs
BACK
SAMPLE K006314_21_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1087136552 |
100% |
94681221383 |
100% |
| Mapped |
1076733613 |
99.04 % |
93630756220 |
98.89 % |
| Passed |
803244609 |
73.89 % |
66013791151 |
69.72 % |
| NotPassed |
273489004 |
25.16 % |
27616965069 |
29.17 % |
| |
|
|
|
|
| LowMAPQ |
216160314 |
19.88 % |
21827389190 |
23.05 % |
| MateUnmapped |
10402939 |
0.96 % |
1050465163 |
1.11 % |
| Duplicate |
34828300 |
3.20 % |
3517525555 |
3.72 % |
| BadOrientation |
92 |
0.00 % |
9292 |
0.00 % |
| LargeInsertSize |
52466 |
0.00 % |
5298008 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
22447832 |
2.06 % |
2266743024 |
2.39 % |
| Unmapped |
10402939 |
0.96 % |
1050465163 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81094991737 |
100% |
| Passed |
62017888422 |
76.48 % |
| Trimmed |
3375776974 |
4.16 % |
| Clipped |
76156914 |
0.09 % |
| Overlapping |
15005043672 |
18.50 % |
| LowQuality |
620125755 |
0.76 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |