/EXTERNAL BLUEPRINT/methylation/K006314_21_lane_gembs

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SAMPLE K006314_21_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25966316 16895336 65.07 %
NonRefCpG 349687 117697 33.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006314_21_lane_gembs_coverage_refCpG.png ./IMG//K006314_21_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006314_21_lane_gembs_coverage_nonRefCpG.png ./IMG//K006314_21_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006314_21_lane_gembs_quality_refcpg.png ./IMG//K006314_21_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006314_21_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6154367 14.30 % 4011956 12.45 % 115224 21.17 % 25274 9.79 %
Intermediate (0.3-0.7) 8348022 19.40 % 4609837 14.30 % 144069 26.46 % 47618 18.45 %
Methylated (0.7-1) 28537274 66.30 % 23607233 73.25 % 285100 52.37 % 185171 71.75 %
Median Methylation 0.820 0.860 0.720 0.850