/EXTERNAL BLUEPRINT/methylation/K010540_1_lane_gembs

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SAMPLE K010540_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25243144 5693711 22.56 %
NonRefCpG 352638 33996 9.64 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010540_1_lane_gembs_coverage_refCpG.png ./IMG//K010540_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010540_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010540_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010540_1_lane_gembs_quality_refcpg.png ./IMG//K010540_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010540_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7055858 17.90 % 1644025 12.19 % 153000 28.30 % 13933 13.63 %
Intermediate (0.3-0.7) 12019087 30.49 % 2813636 20.87 % 177588 32.85 % 24833 24.30 %
Methylated (0.7-1) 20343400 51.61 % 9026581 66.94 % 210020 38.85 % 63443 62.07 %
Median Methylation 0.710 0.820 0.580 0.790