/EXTERNAL BLUEPRINT/K006271_11_lane_gembs

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SAMPLE K006271_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1181699994 100.00 % 590849997 100.00 % 590849997 100.00 %
General Reads 1127353812 95.40 % 564782024 95.59 % 562571788 95.21 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12930423 1.09 % 6484899 1.10 % 6445524 1.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 41415759 3.50 % 19583074 3.31 % 21832685 3.70 %
Bisulfite_reads C2T 596745305 50.50 % 299022947 50.61 % 297722358 50.39 %
Bisulfite_reads G2A 543538930 46.00 % 272243976 46.08 % 271294954 45.92 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 463247050
Average Unique 78.40 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43910113804 36.43 % 17146754857 28.45 % 26763358947 44.41 %
Base Counts Overall C 15836199522 13.14 % 1021375546 1.69 % 14814823976 24.58 %
Base Counts Overall G 16169453634 13.41 % 15151746053 25.14 % 1017707581 1.69 %
Base Counts Overall T 43167729837 35.81 % 26351997036 43.73 % 16815732801 27.90 %
Base Counts Overall N 1449902591 1.20 % 594826202 0.99 % 855076389 1.42 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.99929043884889
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 552634851



Mapping Quality

Mapping Quality Histogram
K006271_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006271_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C00256.Bisulfite-Seq.DNA_Methylation.EGAX00001123391_11