/EXTERNAL BLUEPRINT/mapping_coverage/K006271_11_lane_gembs
BACK
SAMPLE K006271_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1114777998 |
100% |
100078002746 |
100% |
| Mapped |
1100768286 |
98.74 % |
98663021834 |
98.59 % |
| Passed |
897489692 |
80.51 % |
78131883840 |
78.07 % |
| NotPassed |
203278594 |
18.23 % |
20531137994 |
20.52 % |
| |
|
|
|
|
| LowMAPQ |
174894648 |
15.69 % |
17664359448 |
17.65 % |
| MateUnmapped |
14009712 |
1.26 % |
1414980912 |
1.41 % |
| Duplicate |
12585228 |
1.13 % |
1271108028 |
1.27 % |
| BadOrientation |
16 |
0.00 % |
1616 |
0.00 % |
| LargeInsertSize |
11408 |
0.00 % |
1152208 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
15787294 |
1.42 % |
1594516694 |
1.59 % |
| Unmapped |
14009712 |
1.26 % |
1414980912 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
90641450100 |
100% |
| Passed |
73047047447 |
80.59 % |
| Trimmed |
3827738735 |
4.22 % |
| Clipped |
289963349 |
0.32 % |
| Overlapping |
12219602911 |
13.48 % |
| LowQuality |
1257097658 |
1.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |