/EXTERNAL BLUEPRINT/methylation/K006271_11_lane_gembs

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SAMPLE K006271_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26864180 21852595 81.34 %
NonRefCpG 333170 169368 50.84 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006271_11_lane_gembs_coverage_refCpG.png ./IMG//K006271_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006271_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006271_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006271_11_lane_gembs_quality_refcpg.png ./IMG//K006271_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006271_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5641728 11.46 % 4407854 10.27 % 112726 19.24 % 33109 8.74 %
Intermediate (0.3-0.7) 7038151 14.30 % 5073485 11.82 % 121405 20.72 % 60306 15.92 %
Methylated (0.7-1) 36541166 74.24 % 33436111 77.91 % 351720 60.04 % 285276 75.33 %
Median Methylation 0.870 0.880 0.790 0.870