/EXTERNAL BLUEPRINT/K006313_21_lane_gembs/S009W4.Bisulfite-Seq.DNA_Methylation.EGAX00001208467_21

BACK

SAMPLE K006313_21_lane_gembs LANE S009W4.Bisulfite-Seq.DNA_Methylation.EGAX00001208467_21

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1157101764 100.00 % 578550882 100.00 % 578550882 100.00 %
General Reads 1103969926 95.41 % 552719934 95.54 % 551249992 95.28 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 25676176 2.22 % 12856083 2.22 % 12820093 2.22 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27455662 2.37 % 12974865 2.24 % 14480797 2.50 %
Bisulfite_reads C2T 596725917 51.57 % 298863259 51.66 % 297862658 51.48 %
Bisulfite_reads G2A 532920185 46.06 % 266712758 46.10 % 266207427 46.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 432107293
Average Unique 74.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40841744598 34.62 % 16655127303 28.24 % 24186617295 41.01 %
Base Counts Overall C 17640813139 14.95 % 1071956855 1.82 % 16568856284 28.09 %
Base Counts Overall G 17819270169 15.11 % 16710221061 28.33 % 1109049108 1.88 %
Base Counts Overall T 40478338608 34.32 % 23954887170 40.62 % 16523451438 28.02 %
Base Counts Overall N 1180029322 1.00 % 587905529 1.00 % 592123793 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9986795597778733
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 539858319



Mapping Quality

Mapping Quality Histogram
S009W4.Bisulfite-Seq.DNA_Methylation.EGAX00001208467_21.mapq.png



Read Length

Read Length Reads
101 546458836
100 32092046
101 546458836
100 32092046



Insert Size Plot

Insert Size Histogram
S009W4.Bisulfite-Seq.DNA_Methylation.EGAX00001208467_21.isize.png