/EXTERNAL BLUEPRINT/mapping_coverage/K006313_21_lane_gembs
BACK
SAMPLE K006313_21_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1085787317 |
100% |
94440939992 |
100% |
| Mapped |
1074183248 |
98.93 % |
93269569435 |
98.76 % |
| Passed |
812439846 |
74.82 % |
66847206679 |
70.78 % |
| NotPassed |
261743402 |
24.11 % |
26422362756 |
27.98 % |
| |
|
|
|
|
| LowMAPQ |
222032644 |
20.45 % |
22412969490 |
23.73 % |
| MateUnmapped |
11604069 |
1.07 % |
1171370557 |
1.24 % |
| Duplicate |
18243259 |
1.68 % |
1842346539 |
1.95 % |
| BadOrientation |
80 |
0.00 % |
8078 |
0.00 % |
| LargeInsertSize |
40864 |
0.00 % |
4125068 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21426555 |
1.97 % |
2162913581 |
2.29 % |
| Unmapped |
11604069 |
1.07 % |
1171370557 |
1.24 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81996437172 |
100% |
| Passed |
62770776604 |
76.55 % |
| Trimmed |
3423247305 |
4.17 % |
| Clipped |
74732143 |
0.09 % |
| Overlapping |
15074498350 |
18.38 % |
| LowQuality |
653182770 |
0.80 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |