/EXTERNAL BLUEPRINT/methylation/K006313_21_lane_gembs

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SAMPLE K006313_21_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26086625 18682560 71.62 %
NonRefCpG 341721 134139 39.25 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006313_21_lane_gembs_coverage_refCpG.png ./IMG//K006313_21_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006313_21_lane_gembs_coverage_nonRefCpG.png ./IMG//K006313_21_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006313_21_lane_gembs_quality_refcpg.png ./IMG//K006313_21_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006313_21_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5291289 12.09 % 3703684 10.67 % 93441 17.51 % 20927 7.54 %
Intermediate (0.3-0.7) 6461330 14.76 % 3783487 10.90 % 122416 22.94 % 39927 14.39 %
Methylated (0.7-1) 32029834 73.16 % 27219047 78.43 % 317719 59.55 % 216647 78.07 %
Median Methylation 0.870 0.900 0.790 0.890