{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 46015000, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36843753, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 80.07, 
            "paired": 46015000, 
            "paired_qc_failed": 0, 
            "read1": 23007500, 
            "read1_qc_failed": 0, 
            "read2": 23007500, 
            "read2_qc_failed": 0, 
            "paired_properly": 34632385, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 75.26, 
            "with_itself": 35542146, 
            "with_itself_qc_failed": 0, 
            "singletons": 1301607, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.83, 
            "diff_chroms": 588309, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 49040330, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 43899885, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 89.52, 
            "paired": 49040330, 
            "paired_qc_failed": 0, 
            "read1": 24520165, 
            "read1_qc_failed": 0, 
            "read2": 24520165, 
            "read2_qc_failed": 0, 
            "paired_properly": 30373686, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 61.94, 
            "with_itself": 41523513, 
            "with_itself_qc_failed": 0, 
            "singletons": 2376372, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 4.85, 
            "diff_chroms": 7654539, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 15286580, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 367774, 
            "paired_opt_dupes": 1383, 
            "dupes_pct": 0.024059
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 10159811, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 264224, 
            "paired_opt_dupes": 1355, 
            "dupes_pct": 0.026007
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 15276376, 
            "distinct_read_pairs": 14908845, 
            "one_read_pair": 14548706, 
            "two_read_pair": 352874, 
            "NRF": 0.975941, 
            "PBC1": 0.975844, 
            "PBC2": 41.229181
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 10158782, 
            "distinct_read_pairs": 9894586, 
            "one_read_pair": 9636269, 
            "two_read_pair": 252589, 
            "NRF": 0.973993, 
            "PBC1": 0.973893, 
            "PBC2": 38.149995
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 29837612, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 29837612, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 29837612, 
            "paired_qc_failed": 0, 
            "read1": 14918806, 
            "read1_qc_failed": 0, 
            "read2": 14918806, 
            "read2_qc_failed": 0, 
            "paired_properly": 29837612, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 29837612, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 19791174, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 19791174, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 19791174, 
            "paired_qc_failed": 0, 
            "read1": 9895587, 
            "read1_qc_failed": 0, 
            "read2": 9895587, 
            "read2_qc_failed": 0, 
            "paired_properly": 19791174, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 19791174, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 42299, 
        "Np": 0, 
        "N_opt": 42299, 
        "N_consv": 42299, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 235, 
            "corr_est_frag_len": 0.195292492082044, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1996251, 
            "argmin_corr": 1500, 
            "min_corr": 0.1737791, 
            "NSC": 1.123797, 
            "RSC": 0.832367
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.160958142633
        }, 
        "rep1-pr1": {
            "FRiP": 0.183623400497
        }, 
        "rep1-pr2": {
            "FRiP": 0.182529108226
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.12359445014
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.168067797194, 
            "auc": 0.492473948588, 
            "ch_div": 0.31983669683, 
            "elbow_pt": 7.57137547822e-151, 
            "jsd": 0.659224589843, 
            "syn_auc": 0.502885502469, 
            "syn_elbow_pt": 0.125462063088, 
            "syn_jsd": 0.376539438486
        }
    ]
}