{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 61023018, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 56680316, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 92.88, 
            "paired": 61023018, 
            "paired_qc_failed": 0, 
            "read1": 30511509, 
            "read1_qc_failed": 0, 
            "read2": 30511509, 
            "read2_qc_failed": 0, 
            "paired_properly": 54762427, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 89.74, 
            "with_itself": 55650020, 
            "with_itself_qc_failed": 0, 
            "singletons": 1030296, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.69, 
            "diff_chroms": 574311, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 57562006, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55523694, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.46, 
            "paired": 57562006, 
            "paired_qc_failed": 0, 
            "read1": 28781003, 
            "read1_qc_failed": 0, 
            "read2": 28781003, 
            "read2_qc_failed": 0, 
            "paired_properly": 51717909, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 89.85, 
            "with_itself": 54506329, 
            "with_itself_qc_failed": 0, 
            "singletons": 1017365, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.77, 
            "diff_chroms": 1879530, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 24617081, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 271520, 
            "paired_opt_dupes": 2334, 
            "dupes_pct": 0.01103
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 22692587, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 223060, 
            "paired_opt_dupes": 2088, 
            "dupes_pct": 0.00983
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 24616540, 
            "distinct_read_pairs": 24345026, 
            "one_read_pair": 24076000, 
            "two_read_pair": 266561, 
            "NRF": 0.98897, 
            "PBC1": 0.988949, 
            "PBC2": 90.32079
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 22686649, 
            "distinct_read_pairs": 22463666, 
            "one_read_pair": 22242527, 
            "two_read_pair": 219310, 
            "NRF": 0.990171, 
            "PBC1": 0.990156, 
            "PBC2": 101.420487
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 48691122, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 48691122, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 48691122, 
            "paired_qc_failed": 0, 
            "read1": 24345561, 
            "read1_qc_failed": 0, 
            "read2": 24345561, 
            "read2_qc_failed": 0, 
            "paired_properly": 48691122, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 48691122, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 44939054, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 44939054, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 44939054, 
            "paired_qc_failed": 0, 
            "read1": 22469527, 
            "read1_qc_failed": 0, 
            "read2": 22469527, 
            "read2_qc_failed": 0, 
            "paired_properly": 44939054, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 44939054, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 71727, 
        "Np": 0, 
        "N_opt": 71727, 
        "N_consv": 71727, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 280, 
            "corr_est_frag_len": 0.213775518829793, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2063277, 
            "argmin_corr": 1500, 
            "min_corr": 0.1840497, 
            "NSC": 1.16151, 
            "RSC": 1.334311
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.354497731898
        }, 
        "rep1-pr1": {
            "FRiP": 0.34556607169
        }, 
        "rep1-pr2": {
            "FRiP": 0.345361224917
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.322985237313
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.145616496508, 
            "auc": 0.494110745426, 
            "ch_div": 0.324579098999, 
            "elbow_pt": 2.74138432212e-247, 
            "jsd": 0.697159205641, 
            "syn_auc": 0.509690501787, 
            "syn_elbow_pt": 0.225201303138, 
            "syn_jsd": 0.434156763476
        }
    ]
}
