{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 76279584, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 72219166, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.68, 
            "paired": 76279584, 
            "paired_qc_failed": 0, 
            "read1": 38139792, 
            "read1_qc_failed": 0, 
            "read2": 38139792, 
            "read2_qc_failed": 0, 
            "paired_properly": 68817072, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 90.22, 
            "with_itself": 70560437, 
            "with_itself_qc_failed": 0, 
            "singletons": 1658729, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.17, 
            "diff_chroms": 708457, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 42861406, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41140907, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.99, 
            "paired": 42861406, 
            "paired_qc_failed": 0, 
            "read1": 21430703, 
            "read1_qc_failed": 0, 
            "read2": 21430703, 
            "read2_qc_failed": 0, 
            "paired_properly": 38139893, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 88.98, 
            "with_itself": 39997010, 
            "with_itself_qc_failed": 0, 
            "singletons": 1143897, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.67, 
            "diff_chroms": 1200583, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 28510120, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 418283, 
            "paired_opt_dupes": 7204, 
            "dupes_pct": 0.014671
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 15792602, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 138108, 
            "paired_opt_dupes": 676, 
            "dupes_pct": 0.008745
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 28504870, 
            "distinct_read_pairs": 28086666, 
            "one_read_pair": 27674031, 
            "two_read_pair": 407221, 
            "NRF": 0.985329, 
            "PBC1": 0.985309, 
            "PBC2": 67.958261
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 15791243, 
            "distinct_read_pairs": 15653151, 
            "one_read_pair": 15516083, 
            "two_read_pair": 136050, 
            "NRF": 0.991255, 
            "PBC1": 0.991243, 
            "PBC2": 114.046917
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 56183674, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 56183674, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 56183674, 
            "paired_qc_failed": 0, 
            "read1": 28091837, 
            "read1_qc_failed": 0, 
            "read2": 28091837, 
            "read2_qc_failed": 0, 
            "paired_properly": 56183674, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 56183674, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 31308988, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 31308988, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 31308988, 
            "paired_qc_failed": 0, 
            "read1": 15654494, 
            "read1_qc_failed": 0, 
            "read2": 15654494, 
            "read2_qc_failed": 0, 
            "paired_properly": 31308988, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 31308988, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 156164, 
        "Np": 0, 
        "N_opt": 156164, 
        "N_consv": 156164, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 290, 
            "corr_est_frag_len": 0.209471944561146, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.221218, 
            "argmin_corr": 1500, 
            "min_corr": 0.1864384, 
            "NSC": 1.123545, 
            "RSC": 0.6622711
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.310522615963
        }, 
        "rep1-pr1": {
            "FRiP": 0.329633641814
        }, 
        "rep1-pr2": {
            "FRiP": 0.330773862587
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.260073160695
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.159044495059, 
            "auc": 0.494543517175, 
            "ch_div": 0.329606660029, 
            "elbow_pt": 2.35886917851e-288, 
            "jsd": 0.669749569153, 
            "syn_auc": 0.498046925391, 
            "syn_elbow_pt": 0.111516274706, 
            "syn_jsd": 0.395158601959
        }
    ]
}