/cemt/A34409_3_lane_gembs

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SAMPLE A34409_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1234686214 100.00 % 617343107 100.00 % 617343107 100.00 %
General Reads 1219353651 98.76 % 611520619 99.06 % 607833032 98.46 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 79090 0.01 % 39717 0.01 % 39373 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15253473 1.24 % 5782771 0.94 % 9470702 1.53 %
Bisulfite_reads C2T 623188345 50.47 % 312484346 50.62 % 310703999 50.33 %
Bisulfite_reads G2A 596244396 48.29 % 299075990 48.45 % 297168406 48.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 506958379
Average Unique 82.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 61838862830 39.75 % 29220339878 37.57 % 32618522952 41.93 %
Base Counts Overall C 15470416887 9.94 % 602824289 0.77 % 14867592598 19.11 %
Base Counts Overall G 15645050140 10.06 % 14982023929 19.26 % 663026211 0.85 %
Base Counts Overall T 61362606571 39.44 % 32361520136 41.60 % 29001086435 37.28 %
Base Counts Overall N 1253526536 0.81 % 618523250 0.80 % 635003286 0.82 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9939953809736533
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 574891976



Mapping Quality

Mapping Quality Histogram
A34409_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34409_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C62GPANXX_2_1
C62GPANXX_1_1
C46APANXX_7_1