/cemt/methylation/A34409_3_lane_gembs

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SAMPLE A34409_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26191124 12917210 49.32 %
NonRefCpG 269308 56353 20.93 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34409_3_lane_gembs_coverage_refCpG.png ./IMG//A34409_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34409_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34409_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34409_3_lane_gembs_quality_refcpg.png ./IMG//A34409_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34409_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6133938 12.81 % 1628383 5.77 % 153373 31.55 % 25524 14.09 %
Intermediate (0.3-0.7) 12275602 25.64 % 5386765 19.08 % 140782 28.96 % 43922 24.25 %
Methylated (0.7-1) 29466281 61.55 % 21223398 75.16 % 191956 39.49 % 111667 61.66 %
Median Methylation 0.790 0.860 0.570 0.790