{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 51321210, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 42078754, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 81.99, 
            "paired": 51321210, 
            "paired_qc_failed": 0, 
            "read1": 25660605, 
            "read1_qc_failed": 0, 
            "read2": 25660605, 
            "read2_qc_failed": 0, 
            "paired_properly": 38277862, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 74.58, 
            "with_itself": 40604426, 
            "with_itself_qc_failed": 0, 
            "singletons": 1474328, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.87, 
            "diff_chroms": 916607, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 61233540, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 58236787, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.11, 
            "paired": 61233540, 
            "paired_qc_failed": 0, 
            "read1": 30616770, 
            "read1_qc_failed": 0, 
            "read2": 30616770, 
            "read2_qc_failed": 0, 
            "paired_properly": 50526323, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 82.51, 
            "with_itself": 56771071, 
            "with_itself_qc_failed": 0, 
            "singletons": 1465716, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.39, 
            "diff_chroms": 4278577, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 15740700, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 220256, 
            "paired_opt_dupes": 1528, 
            "dupes_pct": 0.013993
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 21455327, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 305205, 
            "paired_opt_dupes": 1806, 
            "dupes_pct": 0.014225
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 15737281, 
            "distinct_read_pairs": 15517087, 
            "one_read_pair": 15299546, 
            "two_read_pair": 214910, 
            "NRF": 0.986008, 
            "PBC1": 0.985981, 
            "PBC2": 71.19048
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 21407515, 
            "distinct_read_pairs": 21105831, 
            "one_read_pair": 20807859, 
            "two_read_pair": 294314, 
            "NRF": 0.985908, 
            "PBC1": 0.985882, 
            "PBC2": 70.699522
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 31040888, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 31040888, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 31040888, 
            "paired_qc_failed": 0, 
            "read1": 15520444, 
            "read1_qc_failed": 0, 
            "read2": 15520444, 
            "read2_qc_failed": 0, 
            "paired_properly": 31040888, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 31040888, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 42300244, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 42300244, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 42300244, 
            "paired_qc_failed": 0, 
            "read1": 21150122, 
            "read1_qc_failed": 0, 
            "read2": 21150122, 
            "read2_qc_failed": 0, 
            "paired_properly": 42300244, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 42300244, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 112814, 
        "Np": 0, 
        "N_opt": 112814, 
        "N_consv": 112814, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 250, 
            "corr_est_frag_len": 0.205965367512402, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2190049, 
            "argmin_corr": 1500, 
            "min_corr": 0.1792893, 
            "NSC": 1.148788, 
            "RSC": 0.6716767
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.34280680388
        }, 
        "rep1-pr1": {
            "FRiP": 0.294821038587
        }, 
        "rep1-pr2": {
            "FRiP": 0.294293077966
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.213268476229
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.143925501685, 
            "auc": 0.492638706072, 
            "ch_div": 0.404608387065, 
            "elbow_pt": 9.82741244835e-158, 
            "jsd": 0.680125955915, 
            "syn_auc": 0.504873854096, 
            "syn_elbow_pt": 0.116467398008, 
            "syn_jsd": 0.381843950258
        }
    ]
}
